PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678389446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24898.5 Da PI: 8.5912 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 69 | 119 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk++rqvtf+kRrngilKKA+ELSvLCdaeva+iifs++gklye+ss 678389446 69 KRIENKIKRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFSS 119 79***********************************************96 PP | |||||||
2 | K-box | 51.7 | 3.7e-18 | 141 | 202 | 7 | 68 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 ++++ +k+++++ e+ +Lk+++++Lq+ qR+llGedL+sL+l++L+ +e+qL++slk i sk 678389446 141 TATDREKEQTSYMEYLQLKSRYQELQQLQRQLLGEDLKSLNLRDLEAIEKQLQSSLKAIGSK 202 446778899************************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.683 | 61 | 121 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-41 | 61 | 120 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.84E-41 | 62 | 133 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-34 | 62 | 148 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-32 | 63 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 63 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-26 | 70 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-32 | 83 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-32 | 98 | 119 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-13 | 144 | 201 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.688 | 148 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MRWDEGVPQL EPIEFISYEV VALSCHSHRL GDGHLSWFSG GVAVLAKEEA KSVHDSKSSN 60 MGRGKIELKR IENKIKRQVT FAKRRNGILK KAYELSVLCD AEVALIIFSN RGKLYEFSSS 120 SNMMETIEKY QKCCFGSMEA TATDREKEQT SYMEYLQLKS RYQELQQLQR QLLGEDLKSL 180 NLRDLEAIEK QLQSSLKAIG SKGVGSSFPL FSSAFFTFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-18 | 61 | 130 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-18 | 61 | 130 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-18 | 61 | 130 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-18 | 61 | 130 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678389446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099041.1 | 1e-66 | developmental protein SEPALLATA 1 isoform X2 | ||||
Swissprot | Q8LLR2 | 2e-64 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | S8EDZ4 | 2e-67 | S8EDZ4_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA18G50900.1 | 5e-64 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-55 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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