PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678389235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 339aa MW: 37933.1 Da PI: 10.5591 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.1 | 6.8e-30 | 142 | 213 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 g+kdrhsk++T +g+RdRRvRls+++a +++dLq +LG+ ++sk ++WL+++ak+ i+el+ ++ ++ s++ 678389235 142 FGRKDRHSKVCTVKGLRDRRVRLSIPTAMQLYDLQHRLGLSQPSKVVDWLMNAAKKDIDELPPLQIPPGSFV 213 689*************************************************************88887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-26 | 143 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.34 | 144 | 202 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MISSSKHDWH LPTHLPNLGR KSCSTPRAME PASGNRLGNQ IKTAGEARRS SQKSREVNGR 60 RGWSSLAEQG EVVHVSVILF DSWHVYSWFR LKIRHLRRGE GMKTLESSKK GSKPYSGASA 120 PITSWSCSRI RDPRIVGVSR AFGRKDRHSK VCTVKGLRDR RVRLSIPTAM QLYDLQHRLG 180 LSQPSKVVDW LMNAAKKDID ELPPLQIPPG SFVSPSFQTL IAPISDKPGG GFKVSGSSWP 240 PYAANKSVYG GCLNPSTSSC LRWGSPSLSL SHPPSSKEED WQILHWQQSL IYHQGITPPT 300 SLRFGQETES ERAAMEFNIT ENFLPEENLQ SKDHPFLTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-16 | 149 | 203 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-16 | 149 | 203 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | RRSSQKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678389235 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | PGSC0003DMT400003453 | 4e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-41 | plastid transcription factor 1 |