PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678388702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26565.7 Da PI: 10.563 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.9e-16 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed ll +++q+G g+W++ +++ g+ R++k+c++rw +yl 678388702 34 RGPWSTKEDALLSSYIQQHGVGRWRSLPEKAGLLRCGKSCRLRWMNYL 81 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 87 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++ E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l 678388702 87 RGNMSEAEIDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.042 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-27 | 31 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.33E-9 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 23.189 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.85E-11 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MLHVHSAAKT RKGESFRVRA MGRSPCCPKV GLRRGPWSTK EDALLSSYIQ QHGVGRWRSL 60 PEKAGLLRCG KSCRLRWMNY LRPGIKRGNM SEAEIDLILR LHRLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLHKKTTTSP SRHKEFVKPE GGRNSISSSK NDNSATQGTK IYAPKAIRIC 180 ASTSVKKLQP SPPPPQPPVE VEEADLLGLG WGMPPECAGD ERMLGKVYDE YLQLLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 32 | 138 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678388702 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070362.1 | 2e-76 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 2e-61 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A286M5H5 | 3e-75 | A0A286M5H5_SALMI; Transcription factor | ||||
STRING | PGSC0003DMT400031607 | 2e-72 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-64 | myb domain protein 5 |
Publications ? help Back to Top | |||
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