PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678388500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 750aa MW: 84369.8 Da PI: 4.8988 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 357.7 | 1.7e-109 | 376 | 747 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d + a + L+++ +++sp+g qRla++f+ +L+arl +++++l+++l+ ++ + e+l+a+++f ++P+ k+ l aN+ 678388500 376 LRTLLITCAQAVAADDRRTAYEQLKQIDQHSSPTGGVYQRLAHVFASGLRARLGGNGNQLCASLTHRKMT---AFEKLKAYQVFLCACPLKKLPILFANK 472 6789*********************************************************999999998...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I a+ +++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL k++e++gvpfe+++++++++e+++le+L++ + 678388500 473 MIGLAAGEAHTLHIVDFGILYGFQWPILIQHLSERPGGPPKLRITGIDLPQPGfrPAERIEETGRRLGKYCERFGVPFEYQAIATQNWENIKLEDLKIVR 572 ****************************************************9******************************999************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E++aVn+ ++l llde+v ++s+rd++Lkl+++++P++ v v + + +++ F++rf eal yysalfd+++a++pr++ eri +E+ +lgre+ nv+ 678388500 573 DEVVAVNCLFRLGLLLDETVVVDSPRDKLLKLIRKMKPDIYVNVVTNGSFSAPFFVTRFKEALFYYSALFDMFDATIPRDNTERIDLEQDFLGREVINVI 672 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 acegaer+er et+++W++r +aGFkp p++ ++k+ + ++ + + + +e+ +++++gWk+r + ++S+W 678388500 673 ACEGAERTERPETYKQWHARHVRAGFKPFPMNAAIMKKLRNKNATAYHKDFLFDEDGNWMLQGWKGRIICATSCW 747 *********************************************99888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.899 | 350 | 728 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-107 | 376 | 747 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MDPRLGEIVQ SSNGYKPDGY EFFTSYDHSE YPANGINHDL GLKFLDVSFL QTSPDPHMFA 60 PSSTAGYEME SPDDQDSDEV LKFLNMILVE ENLEERPSMF YDPLALQATE RSLYEVLGQD 120 YPPSHYNPDI YTDQPSDSPE SVIANSSGGV SSSNAGSSSI DHQWTLDPGE CSSTLEQGHQ 180 QGASNIFVQE VSRSEPALKN PFQVQSNPDT LNSFDSPDLI KNFFSSSESI SQFKKGMEEA 240 SKFLPTNNQL IIDLDQYTLP PKLEDVPVAA VKVENDEINE PSNSIRRRKY TFSEDENSEN 300 LERSSKQSAI HVDEAELSEY FDRVLLCNEG KASEHCTRQA KLPSSEKASM QGVLENVSNG 360 KSQTKTIDSD GDTVDLRTLL ITCAQAVAAD DRRTAYEQLK QIDQHSSPTG GVYQRLAHVF 420 ASGLRARLGG NGNQLCASLT HRKMTAFEKL KAYQVFLCAC PLKKLPILFA NKMIGLAAGE 480 AHTLHIVDFG ILYGFQWPIL IQHLSERPGG PPKLRITGID LPQPGFRPAE RIEETGRRLG 540 KYCERFGVPF EYQAIATQNW ENIKLEDLKI VRDEVVAVNC LFRLGLLLDE TVVVDSPRDK 600 LLKLIRKMKP DIYVNVVTNG SFSAPFFVTR FKEALFYYSA LFDMFDATIP RDNTERIDLE 660 QDFLGREVIN VIACEGAERT ERPETYKQWH ARHVRAGFKP FPMNAAIMKK LRNKNATAYH 720 KDFLFDEDGN WMLQGWKGRI ICATSCWVPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-48 | 383 | 749 | 25 | 379 | Protein SCARECROW |
5b3h_D | 9e-48 | 383 | 749 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678388500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089502.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552354.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552355.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2G9I6D9 | 0.0 | A0A2G9I6D9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009606498.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |