PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678387019

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 326aa MW: 36739.5 Da PI: 8.9

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678387019	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.2e-55	40	167	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+++yL +k+ + +l++ +vi evd++kvePwdLp k k +ekewyfF+++d+ky+tg r+nrat +gyWkatgkdke++++ ++ l 678387019 40 LPPGFRFHPTDEELITHYLSPKMVDGELST-QVIGEVDLNKVEPWDLPWKGKMGEKEWYFFCRKDRKYPTGLRTNRATGAGYWKATGKDKEIFRSkSKIL 138 79***********************999.99***********8778899**********************************9845566 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfy+grap+g+ktdWvmhe+r 678387019 139 IGMKKTLVFYQGRAPRGQKTDWVMHEFRS 167 *************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-62	34	190	IPR003441	NAC domain
PROSITE profile	PS51005	58.252	40	190	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	41	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSLSPPPGSE PRRRSFLPLG NMVRFAAAAA AAAAEEHLIL PPGFRFHPTD EELITHYLSP 60 KMVDGELSTQ VIGEVDLNKV EPWDLPWKGK MGEKEWYFFC RKDRKYPTGL RTNRATGAGY 120 WKATGKDKEI FRSKSKILIG MKKTLVFYQG RAPRGQKTDW VMHEFRSNPM QNHHKVTQKN 180 EWVISRVFKK SSGGKKVHIS DLSKTPDSGG ASRSTTDLPP LMDMAEASRA TYFSNSIEEM 240 AGELTPSSHK SERNSHTYYY DSVMPQDQSL LSLLLENQES FPVFSGETNT SASTCTGFRP 300 IYDHEQLITA DSGGFGPSWN YPFLLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	37	196	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	37	196	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	37	196	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	37	196	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	37	196	17	174	NAC domain-containing protein 19
3swm_B	1e-53	37	196	17	174	NAC domain-containing protein 19
3swm_C	1e-53	37	196	17	174	NAC domain-containing protein 19
3swm_D	1e-53	37	196	17	174	NAC domain-containing protein 19
3swp_A	1e-53	37	196	17	174	NAC domain-containing protein 19
3swp_B	1e-53	37	196	17	174	NAC domain-containing protein 19
3swp_C	1e-53	37	196	17	174	NAC domain-containing protein 19
3swp_D	1e-53	37	196	17	174	NAC domain-containing protein 19
4dul_A	1e-53	37	196	14	171	NAC domain-containing protein 19
4dul_B	1e-53	37	196	14	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678387019

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085744.1	1e-101	NAC domain-containing protein 100
Refseq	XP_019265699.1	1e-101	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLR3	2e-90	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A314L1W1	1e-100	A0A314L1W1_NICAT; Nac domain-containing protein 92
STRING	XP_009761662.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	8e-90	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]