PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678386920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16418.5 Da PI: 7.5283 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.3e-16 | 19 | 66 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 GVr +k+g+++AeIrd + + r++lg+f+taeeAa +++a++k +g 678386920 19 GVR-ERKWGKYAAEIRDsIR----TkNRVWLGTFDTAEEAALVYDQAALKTRG 66 999.555**********432....359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.5E-30 | 16 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.771 | 16 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 17 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-10 | 19 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.35E-26 | 19 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 19 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-8 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDQEPTPTAS TSDKKRLLGV RERKWGKYAA EIRDSIRTKN RVWLGTFDTA EEAALVYDQA 60 ALKTRGASAQ LNFPWSFVEK SLAGLNINWA QWESPAKAIK EFHRKAKRGS SSKRIEAMKE 120 DYLVVLEDLG QELLDELLSE SSVSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 1 | 77 | 1 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678386920 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085905.1 | 1e-44 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A1U7VS01 | 7e-41 | A0A1U7VS01_NICSY; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009764685.1 | 1e-41 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-28 | ethylene-responsive element binding factor 15 |