PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678385837

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 373aa MW: 40813.2 Da PI: 6.5622

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678385837	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	5e-06	254	283	26	54
TSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 26 llPk.askapskKlsKaeiLekAveYIksL 54 +P+ +s a++ K + a++L +A+eYIk+L 678385837 254 RIPPpPSYAQKLKTDTASVLSEAIEYIKYL 283 57886778999******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.22E-4	252	288	No hit	No description
SuperFamily	SSF47459	3.14E-6	255	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-5	263	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MADEFHLGSG NWWDTPTTSS AATASFDTPP PPPLPPLTPS ISTTLNAIAS FGWASEMKPN 60 SAVDSSSMLL RHSHSDAAPD PHLRILGFAQ QAQAQEWNQA SYFLRGDKPE TGDFRSSSSN 120 FSQEHWSDSA HYRRIMNPGF SSSDFSSQSS SNQEGSQSLT PYGGGGVSLH EEPQAQNPNQ 180 NLSMMTMMNN YAAPECWNSY SPLIRARPSR THLHFTNNTP FWNASASASP SSSSMPGPDA 240 GDPAFIPDPD TQTRIPPPPS YAQKLKTDTA SVLSEAIEYI KYLHDQIRVL TTPYLKNQTA 300 VAPTHHHQIK GGTRLSLGSQ SPRSLSGIRV QHLPVMPRIV CRILDPNLWD FFQIGISSQE 360 TKDIVCSLVS PPH

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MADEFHLGSG NWWDTPTTSS AATASFDTPP PPPLPPLTPS ISTTLNAIAS FGWASEMKPN  60
SAVDSSSMLL RHSHSDAAPD PHLRILGFAQ QAQAQEWNQA SYFLRGDKPE TGDFRSSSSN  120
FSQEHWSDSA HYRRIMNPGF SSSDFSSQSS SNQEGSQSLT PYGGGGVSLH EEPQAQNPNQ  180
NLSMMTMMNN YAAPECWNSY SPLIRARPSR THLHFTNNTP FWNASASASP SSSSMPGPDA  240
GDPAFIPDPD TQTRIPPPPS YAQKLKTDTA SVLSEAIEYI KYLHDQIRVL TTPYLKNQTA  300
VAPTHHHQIK GGTRLSLGSQ SPRSLSGIRV QHLPVMPRIV CRILDPNLWD FFQIGISSQE  360
TKDIVCSLVS PPH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678385837

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.4	6e-11	bHLH family protein