PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678385698

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 288aa MW: 32458.4 Da PI: 7.2792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678385698	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.5e-53	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++PwdLp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk v+ +g++v 678385698 14 LPPGFRFYPTDEELLVQYLCRKVSGHHFSL-QIIGEIDLYKFNPWDLPDKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVVTM-EGRKV 111 79*************************9.89***********8777899********************************999.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy+g+apkg+kt+W+mheyrl 678385698 112 GIKKALVFYTGKAPKGVKTNWIMHEYRL 139 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-65	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.143	14	162	IPR003441	NAC domain
Pfam	PF02365	3.1E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVARESDPRS KLHLPPGFRF YPTDEELLVQ YLCRKVSGHH FSLQIIGEID LYKFNPWDLP 60 DKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVVTMEGRK VGIKKALVFY 120 TGKAPKGVKT NWIMHEYRLS DLARKHGSAR LDDWVLCRIY EKNSAARKQE TVSDFETALA 180 SPCKYDDGAD SLPQMGGNGP SDSFKNFYME EEKLQMNHLN HRFGFGSGSG SSYLDESSMG 240 ALVSEMAAEH QGGVGISGFP DDAWCDQRLG GLPHGYAGSY DALWGQYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-98	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-98	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-98	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-98	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-98	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-98	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-98	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-98	1	168	7	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678385698

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842278.1	1e-112	PREDICTED: NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-102	JA2L_SOLLC; NAC domain-containing protein JA2L
Swissprot	Q93VY3	1e-103	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A022QZL0	1e-110	A0A022QZL0_ERYGU; Uncharacterized protein
STRING	Migut.M00863.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-105	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]