PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678383691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 337aa    MW: 37135.2 Da    PI: 9.223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678383691genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
        678383691 14 KGPWTREEDQKLLAYIQQHGHGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding47.63.9e-1567112146
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                      rg+++t E++ +++++++lG+  +W++Ia++++ +Rt++++k++w++
        678383691  67 RGKFSTHEEKTIIRLHALLGNSrRWSAIAAHLP-KRTDNEIKNYWNT 112
                      89******************99***********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24864IPR009057Homeodomain-like
PROSITE profilePS5129424.637965IPR017930Myb domain
SuperFamilySSF466891.12E-2712110IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002499.8E-161461IPR001005SANT/Myb domain
CDDcd001671.38E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2465118IPR009057Homeodomain-like
SMARTSM007171.0E-1366116IPR001005SANT/Myb domain
PROSITE profilePS5129415.7866118IPR017930Myb domain
PfamPF002496.0E-1467112IPR001005SANT/Myb domain
CDDcd001674.29E-1169114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVRPDSPAKE ELKKGPWTRE EDQKLLAYIQ QHGHGSWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF STHEEKTIIR LHALLGNSRR WSAIAAHLPK RTDNEIKNYW NTRLKKRLTR  120
MGIDPVTHKP KSNSGGAAHS KQAANLSHMA QWETARLEAE ARLARESKII SNLQLLQKSI  180
MPPAPPLQLS SPPCLDVLKV WQATSGASNN CFFTSQTVLE SPTSTLNFSS AVAPAAVPRV  240
ITNDAVTTPV TNTNSCDIGG LGCGGNMDDL GSYQQLDYGG YVADAVELAV LNSSNGECFN  300
PILSIAATPG FAEVEDTRNY WNELLNMVNS PMELPGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27111184108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678383691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547692.11e-132transcription factor MYB28-like isoform X1
SwissprotQ9LE631e-93MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H7051e-129A0A2G9H705_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01264.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-79myb domain protein 16