PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678383610

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 32764.8 Da PI: 6.6069

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678383610	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++ e++ +LA+ lgL+ rqV +WFqNrRa++k 678383610 83 KKRRLNVEQVKTLEKNFELGTKLEPERKMRLARDLGLQPRQVAIWFQNRRARWK 136 4568999**********************************************9 PP
2	HD-ZIP_I/II	122.5	2e-39	82	172	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+k kqlEkdy+ Lkr+++a k+en++L++++++L+ e+ 678383610 82 EKKRRLNVEQVKTLEKNFELGTKLEPERKMRLARDLGLQPRQVAIWFQNRRARWKIKQLEKDYDILKRQLKATKAENDALQAQNQRLHGEI 172 69*************************************************************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-18	73	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	78	138	IPR001356	Homeobox domain
SMART	SM00389	5.8E-17	81	142	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-15	83	136	IPR001356	Homeobox domain
CDD	cd00086	6.05E-15	83	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-18	90	136	IPR009057	Homeodomain-like
PRINTS	PR00031	2.2E-5	109	118	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.2E-5	118	134	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-11	138	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAFFQSNFIL QSTREDEQNL PSTSLAPLLS PCAPLEFQVG VSSQFWKRSM SFPAAGAELC 60 EEMAHNSHGE DELSDDGSQL GEKKRRLNVE QVKTLEKNFE LGTKLEPERK MRLARDLGLQ 120 PRQVAIWFQN RRARWKIKQL EKDYDILKRQ LKATKAENDA LQAQNQRLHG EILALKNRES 180 NESINLNNKT EGSPSSRSEN SSEVKLEISR NPDIDSPITA SRPGLFPSSV LRHNAIEQLF 240 QTAPRPEMHA APKMDHAVKE ESSFCNMLCG VDDHTPFWPW MEHHNFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARWKIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678383610

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071017.1	1e-129	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	2e-95	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G9GFL1	1e-127	A0A2G9GFL1_9LAMI; Transcription factor HEX
STRING	VIT_01s0026g01950.t01	1e-122	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-83	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]