PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678383513
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 300aa    MW: 33616.5 Da    PI: 8.5941
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678383513genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-1666111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia  +  gR++k+c++rw++ 
        678383513  66 RGHWRPAEDSKLRELVALYGPQNWNLIADQLE-GRSGKSCRLRWFNQ 111
                      899*****************************.***********996 PP
2Myb_DNA-binding574.3e-18118162147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ +
        678383513 118 RRAFTEEEEEKLLAAHSLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 162
                      678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.01661112IPR017930Myb domain
SMARTSM007171.3E-1365114IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2866159IPR009057Homeodomain-like
PfamPF002491.2E-1566111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2667119IPR009057Homeodomain-like
CDDcd001674.93E-1369110No hitNo description
PROSITE profilePS5129426.977113167IPR017930Myb domain
SMARTSM007171.0E-15117165IPR001005SANT/Myb domain
PfamPF002491.1E-14118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-21120166IPR009057Homeodomain-like
CDDcd001677.86E-8128163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPTPTKSSCS SSSSDSCAMY TNVSFLSTNP DIDLNSTSNQ EDEEGFRGMH GALTKEQTGN  60
AKLCARGHWR PAEDSKLREL VALYGPQNWN LIADQLEGRS GKSCRLRWFN QLDPRINRRA  120
FTEEEEEKLL AAHSLYGNKW AMIARLFPGR TDNAVKNHWH VVMARRYREQ SSACRRRKMN  180
QFLFSRMAPD DAATQTDQNI NGGRGVLSSS GNREGAPNAE GFWSPHPSVA FSPCHSTSEV  240
MNIFNHNQYI LYPAIQPQPR NFPSESTPQP WNAPVVNSSA AHEKTAPPFI DFLGVASLRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33641665107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678383513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.11e-107myb-like protein Q
TrEMBLA0A2G9I2T91e-103A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E00083.1.p1e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-73myb domain protein 105