PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678380694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17666.7 Da PI: 9.702 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr+r++lg++ t+ Aa+a++ a +l+g 678380694 31 PYRGIRMRK-WGKWVAEIREP---NKRTRIWLGSYSTPIAAARAYDTALFYLRG 80 59*****99.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-30 | 31 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.181 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-35 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.00E-27 | 32 | 89 | No hit | No description |
SuperFamily | SSF54171 | 6.34E-21 | 32 | 89 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.5E-12 | 32 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 70 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
METACCTSSS ASSSSSETSK KKGREHPPDR PYRGIRMRKW GKWVAEIREP NKRTRIWLGS 60 YSTPIAAARA YDTALFYLRG PNARLNFPEF ILKEDRVNQR PHDLSAAAIR KKATEIGAMV 120 DALHSSSPGS GANDSRVREK PDLNQYPSPE NSEGEEDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 32 | 88 | 6 | 63 | ATERF1 |
3gcc_A | 2e-14 | 32 | 88 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678380694 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074400.1 | 3e-71 | ethylene-responsive transcription factor ERF008-like | ||||
Swissprot | O22174 | 5e-50 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A4D8Y115 | 1e-69 | A0A4D8Y115_SALSN; EREBP-like factor | ||||
STRING | cassava4.1_029328m | 3e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 8e-52 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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