PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678380439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 291aa    MW: 32996 Da    PI: 7.0529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678380439genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.63.9e-203177148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ll+++v++ G+ +W+ Ia++++ gR +kqc++rw ++l
        678380439 31 KGPWSKEEDDLLIELVQKNGNSRWSEIAKHLP-GRIGKQCRERWCNHL 77
                     79******************************.*************96 PP

2Myb_DNA-binding35.13.1e-1185117337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      +WT eE+++l++a+  +G++ W+ Ia+ ++ gR l
        678380439  85 PWTREEEDILIKAHGSYGNK-WSEIAKLLP-GRQL 117
                      8*******************.*********.9966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-10633IPR009057Homeodomain-like
PROSITE profilePS5129431.2262681IPR017930Myb domain
SuperFamilySSF466896.25E-2928116IPR009057Homeodomain-like
SMARTSM007174.0E-193079IPR001005SANT/Myb domain
PfamPF002496.4E-203177IPR001005SANT/Myb domain
CDDcd001671.00E-173377No hitNo description
Gene3DG3DSA:1.10.10.608.1E-263478IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-1679116IPR009057Homeodomain-like
PROSITE profilePS5129411.01282129IPR017930Myb domain
SMARTSM007170.0182136IPR001005SANT/Myb domain
PfamPF002493.2E-984115IPR001005SANT/Myb domain
CDDcd001674.70E-885115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMRFTASCLP GRTEVQCLHR YENVLNPSLV KGPWSKEEDD LLIELVQKNG NSRWSEIAKH  60
LPGRIGKQCR ERWCNHLKPD IVKAPWTREE EDILIKAHGS YGNKWSEIAK LLPGRQLDHH  120
LSSGAALNHH SDLYSSQGNH ESACFPDLPH ENTGLPILEN PSLHEQGSSH GPQDRPCSIN  180
SSPQRTDQAL RDHRDTIPHS DVATNSSEPP YSGLCYRPLE KYDVDIYLKT GSFLSTDTYI  240
PQQEGWNFPL HATSSALKQS LLDTMSRLQA MNYEAPSIVR RSIRRCTMPK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-4731154142MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4731154142MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678380439
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094689.21e-70transcription factor MYB3R-5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1748824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-49myb domain protein 3r-5