PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678380439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 32996 Da PI: 7.0529 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.6 | 3.9e-20 | 31 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll+++v++ G+ +W+ Ia++++ gR +kqc++rw ++l 678380439 31 KGPWSKEEDDLLIELVQKNGNSRWSEIAKHLP-GRIGKQCRERWCNHL 77 79******************************.*************96 PP | |||||||
2 | Myb_DNA-binding | 35.1 | 3.1e-11 | 85 | 117 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT eE+++l++a+ +G++ W+ Ia+ ++ gR l 678380439 85 PWTREEEDILIKAHGSYGNK-WSEIAKLLP-GRQL 117 8*******************.*********.9966 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-10 | 6 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.226 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-29 | 28 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-19 | 30 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-20 | 31 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-17 | 33 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-26 | 34 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-16 | 79 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.012 | 82 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 0.01 | 82 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-9 | 84 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.70E-8 | 85 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MMRFTASCLP GRTEVQCLHR YENVLNPSLV KGPWSKEEDD LLIELVQKNG NSRWSEIAKH 60 LPGRIGKQCR ERWCNHLKPD IVKAPWTREE EDILIKAHGS YGNKWSEIAK LLPGRQLDHH 120 LSSGAALNHH SDLYSSQGNH ESACFPDLPH ENTGLPILEN PSLHEQGSSH GPQDRPCSIN 180 SSPQRTDQAL RDHRDTIPHS DVATNSSEPP YSGLCYRPLE KYDVDIYLKT GSFLSTDTYI 240 PQQEGWNFPL HATSSALKQS LLDTMSRLQA MNYEAPSIVR RSIRRCTMPK D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-47 | 3 | 115 | 4 | 142 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-47 | 3 | 115 | 4 | 142 | MYB PROTO-ONCOGENE PROTEIN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678380439 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094689.2 | 1e-70 | transcription factor MYB3R-5 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17488 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 7e-49 | myb domain protein 3r-5 |