PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678379936
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 323aa    MW: 36938.7 Da    PI: 8.6526
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678379936genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-154689146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg +T+eE++ ++++++++G++ W+ Ia+ ++ +Rt++++k++w++
        678379936 46 RGDFTPEEEKEILRLHALFGNR-WSMIAANLP-RRTDNEIKNYWNS 89
                     899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.879140IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-102652IPR009057Homeodomain-like
SuperFamilySSF466891.21E-202699IPR009057Homeodomain-like
PROSITE profilePS5129424.8174195IPR017930Myb domain
SMARTSM007171.0E-154593IPR001005SANT/Myb domain
PfamPF002492.9E-144689IPR001005SANT/Myb domain
CDDcd001672.55E-114991No hitNo description
Gene3DG3DSA:1.10.10.602.3E-205392IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDEEGRPEAR RVHPRPRLWK LARGLRRCKK SCRLRWMNYL RPEVKRGDFT PEEEKEILRL  60
HALFGNRWSM IAANLPRRTD NEIKNYWNSR LKKRLLRMGI DPVTHRPKEE EAIEKFGWRQ  120
TARVNHITQW EIVRIQTESR LISGSKISSM LHSQWNSNTR GMLADPPSFR CMDVLQAWHT  180
MNLHTSQATP MSLEMQNLTS SFSKHNCSSV ETGVDFGIER AQGSGSGLYS SDFDSNGDFS  240
FMAGGNGDHW FPELLDELSH SNLLDSLASP AVGNNLVFGH SPAMEFDHGI STTPNLKGSI  300
SFGFNSNKES DLMKDDLPDR LHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17219533108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap678379936
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-54transcription factor MYB28-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.28e-52myb domain protein 16