PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678379883
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 150aa    MW: 16874.2 Da    PI: 7.6058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678379883genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19756255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+Wv+eIr+ps    ++r++lg+f tae+Aa+a+++a++ + g
  678379883  7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETAEDAARAYDEAALIMCG 56
               69******9.**********944...5**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.44E-33663No hitNo description
PfamPF008472.6E-12756IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20765IPR016177DNA-binding domain
SMARTSM003802.3E-36770IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-33764IPR001471AP2/ERF domain
PRINTSPR003672.2E-11819IPR001471AP2/ERF domain
PRINTSPR003672.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPRSRQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETA EDAARAYDEA ALIMCGPNVR  60
TNFGHRPDEP RILLPANLMA KLQKCCHLAS LQVANKHEQG QGRGATGMKG EPMGLEGEMS  120
GGAPLEDDQI DQMIQELLHR GPMEFSPELS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-16863662ATERF1
3gcc_A7e-16863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678379883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842116.16e-54ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-45ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLS8BTJ52e-51S8BTJ5_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0003s17830.11e-50(Populus trichocarpa)
STRINGLus100168158e-51(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-29ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]