PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678379444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28895.7 Da PI: 6.9213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l d ++++G+ +W + +++ g++R++k+c++rw++yl 678379444 14 KGPWSAEEDAKLRDFIHKYGNVgNWIALPKKAGLKRCGKSCRLRWLNYL 62 79******************879************************97 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.3e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ 678379444 69 GEFTDEEDSVICSLYTAIGSR-WSIIASQLP-GRTDNDIKNHWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.088 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.17E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.917 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.29E-7 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRSPCCDKD NVRKGPWSAE EDAKLRDFIH KYGNVGNWIA LPKKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDEEDSVIC SLYTAIGSRW SIIASQLPGR TDNDIKNHWN TKLKKKLMKM 120 STLLLPLAPQ RYPEATFQCG ATIPLCNPLF FQHFQAPNPL PRTNTGSFLS LENLESGASL 180 PVSPYQHSYH PHGDLAGFQS ASSSYRLETN NDEMGLSNSL ILDQETPFFY DHQPIDLGES 240 CDFSFPTDDP GLWVLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678379444 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749852.1 | 1e-72 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_017645285.1 | 1e-72 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1U8PF68 | 3e-71 | A0A1U8PF68_GOSHI; transcription factor RAX2-like | ||||
STRING | Gorai.009G110800.1 | 7e-72 | (Gossypium raimondii) | ||||
STRING | XP_009600706.1 | 9e-72 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-64 | myb domain protein 36 |