PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678378237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 217aa MW: 24350.3 Da PI: 8.5353 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102 | 1e-31 | 14 | 92 | 2 | 80 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+ ++sk +eWLl++ak ai+el+ ++ + s++ ++ ++ 678378237 14 FGGKDRHSKVRTVRGLRDRRVRLSVQTAMQVYDLQDRLGVGQPSKVVEWLLNAAKDAIDELPPLQIPEGSSFFQGLEQP 92 689*************************************************************666554442222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-29 | 16 | 94 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.71 | 16 | 74 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MLKNPRVVRV SRAFGGKDRH SKVRTVRGLR DRRVRLSVQT AMQVYDLQDR LGVGQPSKVV 60 EWLLNAAKDA IDELPPLQIP EGSSFFQGLE QPSSHHLEFV DQALNWNPDA ERLDFSARID 120 AEKEIAASVF NPFGRWDPPR GHEFPYGHHQ DVHAIGAAQW ATAHVDQHGV PWHPSWKFDS 180 KSINLQDGSR IPNVFLDSSG DASSRPPSPS KVPTCLK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 21 | 75 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 21 | 75 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678378237 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1J6JFL2 | 3e-40 | A0A1J6JFL2_NICAT; Transcription factor tcp13 | ||||
TrEMBL | A0A251S7B7 | 7e-40 | A0A251S7B7_HELAN; Putative transcription factor, TCP | ||||
STRING | XP_009792504.1 | 2e-40 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-28 | plastid transcription factor 1 |