PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678378020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31511 Da PI: 5.1471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a++ +++++g 678378020 137 KYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAAMAYDMEALRFRG 186 8********.**********64....55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-32 | 136 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-32 | 137 | 196 | No hit | No description |
SMART | SM00380 | 4.9E-36 | 137 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.816 | 137 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 137 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-12 | 137 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
LAGFNDHSSP LCFDSPEESR FSGVSPLDSM TLHMRDFKVE NSSPEAFQFH SWGGGIEIET 60 THRQFFHSEN GNYSMLPGYS REMGVSTMMS TLTNAGEVGG GGGVCSQSGS IVTIVKGPAV 120 YAYSTVVTLN RDSSPRKYRG VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA EAAAMAYDME 180 ALRFRGNKAK LNFPENVKLA NREPSNPPPD QHRSSNPPPP TVDTHPQVQG CYSEYDNQYN 240 AWSTLDETMM FYPSVTDYTA SSPLPAELWP EMSEFAAIHW PGDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 136 | 197 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678378020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159794.1 | 1e-36 | hypothetical protein PHAVU_002G267800g | ||||
TrEMBL | V7CR13 | 3e-35 | V7CR13_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159794.1 | 6e-36 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-27 | ethylene response factor 110 |