PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678374037

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 32774.5 Da PI: 5.4304

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678374037	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	31	86	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F++ ++p+ ++r+eL ++lgL+ qVk+WFqN+R++ k 678374037 31 KKRYHRHTQHQIQEMESFFKEFPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQIK 86 688999**********************************************9877 PP
2	START	36.5	1.2e-12	213	290	1	68
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCC CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveelldd 68 ela +a++el+++a+a+ep+W e ++ de+l+ f+++ + ++ea+r+s+vv+m++++lve+l+d 678374037 213 ELAVTAMEELITMAQAGEPLWIANQednssETLKDDEYLRAFPRGIGprpfgLKSEASRESAVVIMNHTNLVEILMDA 290 57899***************99989999999*******999***************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-20	16	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.52E-18	20	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	28	88	IPR001356	Homeobox domain
SMART	SM00389	2.2E-16	29	92	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	3.22E-17	31	89	No hit	No description
PROSITE profile	PS50848	12.499	204	293	IPR002913	START domain
Pfam	PF01852	7.0E-7	214	289	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGGDDEESRA ATDATENTSG EDQNADHRSK KKRYHRHTQH QIQEMESFFK EFPHPDDKQR 60 KELGRRLGLE PLQVKFWFQN KRTQIKAHHE RDENTQLRNE NEKLRAENLR YKEALGNATC 120 PHCGAPAAVV GDMPFDDHHL QNDNARLREE IDRISGVAAK YVGGKQSLPF PPGTPRSLDL 180 GAGAFAGEIF GATDRLPSVV STINDADKPV IIELAVTAME ELITMAQAGE PLWIANQEDN 240 SSETLKDDEY LRAFPRGIGP RPFGLKSEAS RESAVVIMNH TNLVEILMDA VGI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678374037

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105031.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_027105032.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_027111570.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_027111571.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_027159776.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_027159777.1	1e-145	homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q93V99	1e-121	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	S8CYM2	1e-151	S8CYM2_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009799795.1	1e-137	(Nicotiana sylvestris)
STRING	XP_009597904.1	1e-137	(Nicotiana tomentosiformis)
STRING	Migut.H01557.1.p	1e-137	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-117	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]