PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678371898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14944.9 Da PI: 8.8205 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.7e-09 | 43 | 89 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ + + da + + + +W ar +g g++ +++k+++q + 678371898 43 TWTAKQNKAFEDALATYDRDtpdRWQNMARAVG-GKSVEEVKLHYQRL 89 7*****************99*************.************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.802 | 39 | 94 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-7 | 40 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.71E-11 | 42 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-4 | 43 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-5 | 43 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-6 | 43 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MSPSDFLPDP PPHQHYIRAG LQCENSILQA SCLQGCKMSS NSTWTAKQNK AFEDALATYD 60 RDTPDRWQNM ARAVGGKSVE EVKLHYQRLV HDINRIESGK VPVPNYKDFS SKNNKIAEMQ 120 EQRMKYMKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-28 | 39 | 130 | 6 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678371898 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083676.1 | 6e-42 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 2e-34 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | S8D6U5 | 2e-48 | S8D6U5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009365559.1 | 6e-37 | (Pyrus x bretschneideri) | ||||
STRING | XP_008364991.1 | 6e-37 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-37 | RAD-like 1 |
Publications ? help Back to Top | |||
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