PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678371365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27080.8 Da PI: 7.9006 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.8 | 5.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRr+g+ KKA ELSvLCdae+ +i+fss+gkly+++s 678371365 9 KRIENKINRQVTFAKRRAGLWKKARELSVLCDAEIVMIVFSSRGKLYDFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 94.4 | 1.8e-31 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++ +l+ + +lq+ke++l+e+nk+L+++l+e 678371365 85 TREALELSSQQEYLKLKARYEALQRTQRNLLGEDLGPLNSKELESLERQLDASLKHIRSTRTQAMLDTLADLQRKEHALNEANKNLKQRLME 176 455556789*******************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.455 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.38E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-30 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.462 | 90 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-25 | 92 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRAGLWK KARELSVLCD AEIVMIVFSS RGKLYDFCSS 60 SSTMLETLEK YQNSNYGPPE TNVSTREALE LSSQQEYLKL KARYEALQRT QRNLLGEDLG 120 PLNSKELESL ERQLDASLKH IRSTRTQAML DTLADLQRKE HALNEANKNL KQRLMEGCQI 180 SLQWDSSACD VAYGGQPHHQ AQPDVFLHPL DCEPTLQIGY QNDHLAVAAG PTMTSWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-43 | 76 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-43 | 76 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-43 | 76 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-43 | 76 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678371365 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096723.1 | 1e-134 | agamous-like MADS-box protein AGL9 homolog isoform X2 | ||||
Swissprot | Q03489 | 1e-130 | AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog | ||||
TrEMBL | A0A068UXU4 | 1e-133 | A0A068UXU4_COFCA; Uncharacterized protein | ||||
TrEMBL | E9JPX2 | 1e-133 | E9JPX2_COFAR; MADS-box protein AGL2 subfamily | ||||
STRING | XP_009797140.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-108 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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