PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678368991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23524.1 Da PI: 9.8723 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.7 | 1.7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fss+g+l e+ss 678368991 9 KRIENATSRQVTFSKRRAGLLKKAHELSVLCDAEVALIVFSSKGRLCEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 61.8 | 2.6e-21 | 81 | 172 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s ++e+k++ ++ + L+++i L ++R+l+Ge+Les+s++eL+ Le qLe+sl+k + +K l +e+ie+l++kek+l++en++L+k++ 678368991 81 SiVDESKMQGSDGNPVDLNNRIAFLDDSKRKLMGENLESCSVEELEALELQLEQSLSKFKCRKGVLRKEEIERLKEKEKNLSKENTELKKRY 172 24788899999999999***********************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.104 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-31 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.99E-38 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.612 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.5E-20 | 97 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MVRGKTQIKR IENATSRQVT FSKRRAGLLK KAHELSVLCD AEVALIVFSS KGRLCEFSSS 60 SVIDSTIERY LKAKNPEVSK SIVDESKMQG SDGNPVDLNN RIAFLDDSKR KLMGENLESC 120 SVEELEALEL QLEQSLSKFK CRKGVLRKEE IERLKEKEKN LSKENTELKK RYSMLPSPSP 180 IKRPSAAIRD VDVETALVIG LPDSRIGRN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678368991 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071972.1 | 7e-71 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | A2Z9Q7 | 1e-57 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A9YTS5 | 1e-64 | A9YTS5_9LAMI; SOC1-like protein 2 | ||||
STRING | Solyc08g080100.2.1 | 3e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45660.1 | 5e-43 | AGAMOUS-like 20 |