PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678368652

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 456aa MW: 49777 Da PI: 7.3164

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678368652	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.2e-36	51	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgy 82 lp+G++F+Ptd+el+ e+L++k++gk+ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + + 678368652 51 LPAGVKFDPTDQELI-EHLEAKAQGKEskshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETR 146 799**********.99****9666543222..3444433445******.555666799**************73334555544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l 678368652 147 WHKTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 ********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-39	41	212	IPR003441	NAC domain
PROSITE profile	PS51005	33.046	51	212	IPR003441	NAC domain
Pfam	PF02365	3.4E-16	52	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MEDNNPLCGS KHCPGCGHKL DGKPVSSSSS VFLSVLLLPK MVVWCKDWVG LPAGVKFDPT 60 DQELIEHLEA KAQGKESKSH PLIDEFIPTI DGEDGICYTH PEKLPGVTRD GLSRHFFHRP 120 SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMANG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGKHEEEK EGELVVSKIF YQTQPRQCNW SERISGGVAA SAAVTDSGGS 240 SSSRKDEFAA AAGNLAAIPG YNAPDIHRHF GFLPVSFDQG DRIGEASIGR EAGGGACEDV 300 IGEPRLHHPQ QQQQRHQIST AFNIRRPSHS VSTIISPASM NMILDQDHSF DVINLPHQSF 360 QPPPQPPPPA PPQHHKLGGR STSGLEEIIM GCTSSDIKEV SGFCVCFTDK RETGTSFVAG 420 IDDGEPTGSG VVEVFDVLAG AGQPRSSWIA PIGDQN

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MEDNNPLCGS KHCPGCGHKL DGKPVSSSSS VFLSVLLLPK MVVWCKDWVG LPAGVKFDPT  60
DQELIEHLEA KAQGKESKSH PLIDEFIPTI DGEDGICYTH PEKLPGVTRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMANG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGKHEEEK EGELVVSKIF YQTQPRQCNW SERISGGVAA SAAVTDSGGS  240
SSSRKDEFAA AAGNLAAIPG YNAPDIHRHF GFLPVSFDQG DRIGEASIGR EAGGGACEDV  300
IGEPRLHHPQ QQQQRHQIST AFNIRRPSHS VSTIISPASM NMILDQDHSF DVINLPHQSF  360
QPPPQPPPPA PPQHHKLGGR STSGLEEIIM GCTSSDIKEV SGFCVCFTDK RETGTSFVAG  420
IDDGEPTGSG VVEVFDVLAG AGQPRSSWIA PIGDQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-12	49	193	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678368652

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549346.1	1e-171	uncharacterized protein LOC105162027 isoform X2
Swissprot	Q9M0F8	1e-142	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2Z7BSZ3	1e-178	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	evm.model.supercontig_78.40	1e-161	(Carica papaya)
STRING	Migut.K00558.1.p	1e-160	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-114	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]