PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678368072
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 321aa    MW: 36059 Da    PI: 5.3736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678368072genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-142168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  +    G g+W+ Iar  g+ R++k+c++rw +yl
        678368072 21 KGLWSPEEDEKLMSYMLSSGQGCWSDIARNAGLMRCGKSCRLRWINYL 68
                     678*******************************************97 PP

2Myb_DNA-binding51.13.1e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+e++++++  lG++ W+ Ia++++ gRt++++k++w++
        678368072  74 RGAFSQQEEEIIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1071668IPR017930Myb domain
SuperFamilySSF466891.37E-2718115IPR009057Homeodomain-like
SMARTSM007176.5E-102070IPR001005SANT/Myb domain
PfamPF002491.2E-122168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-232275IPR009057Homeodomain-like
CDDcd001673.39E-92468No hitNo description
PROSITE profilePS5129425.61769123IPR017930Myb domain
SMARTSM007171.1E-1573121IPR001005SANT/Myb domain
PfamPF002491.5E-1474117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2576123IPR009057Homeodomain-like
CDDcd001672.22E-1176116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRRPDQGSRT GEDGVSVKMR KGLWSPEEDE KLMSYMLSSG QGCWSDIARN AGLMRCGKSC  60
RLRWINYLRP DLKRGAFSQQ EEEIIIHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRIKNNNRSN VDGAAMASAS PQGSGDSAPM TTTTSSGPIF MQEYDVVYTD SSSSLNSAVQ  180
TQTMPPLPSH FSGYSIPHLD PHHALNAAVS SGPLPSFTFN AELGEFVEDH CNYNYNYNYN  240
YSMEPCITGL ENEVSDPGMD NFLGRRTTGN VVNTNHFLEE EQDMMIGVGN QWQEQSFKRW  300
ESDWEGSLAN VSSLPYLDFS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28191235108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678368072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022895948.11e-87transcription factor MYB83-like
TrEMBLA0A2G9I1W98e-95A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009612035.12e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-52myb domain protein 46