PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678368072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36059 Da PI: 5.3736 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.4e-14 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + G g+W+ Iar g+ R++k+c++rw +yl 678368072 21 KGLWSPEEDEKLMSYMLSSGQGCWSDIARNAGLMRCGKSCRLRWINYL 68 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e++++++ lG++ W+ Ia++++ gRt++++k++w++ 678368072 74 RGAFSQQEEEIIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.107 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-27 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-9 | 24 | 68 | No hit | No description |
PROSITE profile | PS51294 | 25.617 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 76 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.22E-11 | 76 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MRRPDQGSRT GEDGVSVKMR KGLWSPEEDE KLMSYMLSSG QGCWSDIARN AGLMRCGKSC 60 RLRWINYLRP DLKRGAFSQQ EEEIIIHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK 120 KRIKNNNRSN VDGAAMASAS PQGSGDSAPM TTTTSSGPIF MQEYDVVYTD SSSSLNSAVQ 180 TQTMPPLPSH FSGYSIPHLD PHHALNAAVS SGPLPSFTFN AELGEFVEDH CNYNYNYNYN 240 YSMEPCITGL ENEVSDPGMD NFLGRRTTGN VVNTNHFLEE EQDMMIGVGN QWQEQSFKRW 300 ESDWEGSLAN VSSLPYLDFS H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 19 | 123 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678368072 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022895948.1 | 1e-87 | transcription factor MYB83-like | ||||
TrEMBL | A0A2G9I1W9 | 8e-95 | A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_009612035.1 | 2e-80 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 7e-52 | myb domain protein 46 |