PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678367738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 281aa    MW: 31448 Da    PI: 7.1222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678367738genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d++++ G+g +W + ++++g++R++k+c++rw++yl
        678367738 14 KGPWSAEEDAKLKDYIHKNGTGgNWIALPQKVGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding36.41.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        678367738  69 GEFSNEEDGIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.871966IPR017930Myb domain
SuperFamilySSF466891.1E-2612109IPR009057Homeodomain-like
SMARTSM007179.9E-131364IPR001005SANT/Myb domain
PfamPF002495.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-231569IPR009057Homeodomain-like
CDDcd001679.90E-101662No hitNo description
PROSITE profilePS5129414.56967117IPR017930Myb domain
SMARTSM007172.2E-1067115IPR001005SANT/Myb domain
PfamPF002492.1E-1069111IPR001005SANT/Myb domain
CDDcd001671.79E-770113No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCDKA KVKKGPWSAE EDAKLKDYIH KNGTGGNWIA LPQKVGLNRC GKSCRLRWLN  60
YLRPNIKHGE FSNEEDGIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKFFMG  120
VSQSQGASSY HHHLPSSNTN DLITPSPYFP QTPSFYDDTQ KPFSILYNPS TTPFTDGLFP  180
PFRPSYEDGK HNVLFFGGEG GVTSSPDGSC ITNQMNNNHE NQGFLIGDNE YGFSSSNPCF  240
RQNDPLRYDG IQEITELIDS SPICSDNLGF FADYPPGNVR F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678367738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077483.18e-83transcription factor RAX2 isoform X1
TrEMBLA0A2G9GXK94e-83A0A2G9GXK9_9LAMI; Transcription factor, Myb superfamily
STRINGPOPTR_0009s01270.15e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-74myb domain protein 68