PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678367738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31448 Da PI: 7.1222 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++++ G+g +W + ++++g++R++k+c++rw++yl 678367738 14 KGPWSAEEDAKLKDYIHKNGTGgNWIALPQKVGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.4 | 1.2e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ 678367738 69 GEFSNEEDGIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.871 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.90E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 14.569 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRAPCCDKA KVKKGPWSAE EDAKLKDYIH KNGTGGNWIA LPQKVGLNRC GKSCRLRWLN 60 YLRPNIKHGE FSNEEDGIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKFFMG 120 VSQSQGASSY HHHLPSSNTN DLITPSPYFP QTPSFYDDTQ KPFSILYNPS TTPFTDGLFP 180 PFRPSYEDGK HNVLFFGGEG GVTSSPDGSC ITNQMNNNHE NQGFLIGDNE YGFSSSNPCF 240 RQNDPLRYDG IQEITELIDS SPICSDNLGF FADYPPGNVR F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678367738 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077483.1 | 8e-83 | transcription factor RAX2 isoform X1 | ||||
TrEMBL | A0A2G9GXK9 | 4e-83 | A0A2G9GXK9_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | POPTR_0009s01270.1 | 5e-81 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-74 | myb domain protein 68 |