PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678364718

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 294aa MW: 32663.4 Da PI: 5.9485

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678364718	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.8e-31	158	213	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+ eLHerF++a+e+LGGs++AtPk+i+elm+++gLt+++vkSHLQkYRl+ 678364718 158 KARRCWSLELHERFLHALEKLGGSQRATPKQIRELMQMDGLTNDEVKSHLQKYRLH 213 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.519	155	215	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-27	156	216	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.85E-16	156	216	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-25	158	213	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-8	160	211	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNEEYIEALE EERRKIRVFQ RELPLCLELV TQTIESWKQG LVGSEKSGSE EPDLEEFIPV 60 KGVSDCAQQG IFEEDEDGNS RKSDWLRSVQ LWSQNPDPVS NSKLSSPRRV AVIEVQRNGC 120 AFHPFTDSTP MKSAPPSSSS TVETSGARKK QDKESQRKAR RCWSLELHER FLHALEKLGG 180 SQRATPKQIR ELMQMDGLTN DEVKSHLQKY RLHARRPGSS PNPATPAMTE ATPQFVVVGG 240 IWVPSAMGTT ASEGEVSSPE IYAPVAKHPN PFQEPESDSK GTSERAPAHG NASV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	158	211	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	158	211	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	158	211	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	158	211	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678364718

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	5e-93	myb family transcription factor EFM
Swissprot	Q9FPE8	4e-76	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2G9GW56	2e-91	A0A2G9GW56_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	4e-89	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	6e-72	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]