PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678364418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Whirly | ||||||||
Protein Properties | Length: 232aa MW: 25347.9 Da PI: 9.8387 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 187.6 | 2.1e-58 | 56 | 191 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 vyk+kaal + ++p+f+ l+sg+ +l+r+Gg++l+l +a++erky+Wek+q f+lsatev++l++l+skesceffhdpa+k+sn+G++rk+l+++ + d 678364418 56 VYKGKAALAAEMILPKFNRLKSGSYRLERSGGVMLTLWPAIGERKYNWEKRQLFSLSATEVGSLISLGSKESCEFFHDPAMKSSNAGQIRKTLSIKAHDD 155 9*************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 GsG+f+ l v n+++++n++++vPvs aefavlrs+ 678364418 156 GSGYFITLGVMNNVLRTNDRLTVPVSTAEFAVLRSA 191 *********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.3E-69 | 47 | 215 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.83E-62 | 49 | 232 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.9E-56 | 56 | 191 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MFVEASSDLT LLRGMSFKAG VSAAFPGSTE ATIPTAYSRV RPDGNPGIKI YAPYTVYKGK 60 AALAAEMILP KFNRLKSGSY RLERSGGVML TLWPAIGERK YNWEKRQLFS LSATEVGSLI 120 SLGSKESCEF FHDPAMKSSN AGQIRKTLSI KAHDDGSGYF ITLGVMNNVL RTNDRLTVPV 180 STAEFAVLRS ACTFALPHLL GWDKHSNQLP SSNSESSYRS AAPAIPSLEW DR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-82 | 49 | 208 | 10 | 169 | StWhy2 |
3n1i_A | 1e-82 | 49 | 208 | 10 | 169 | protein StWhy2 |
3n1j_A | 1e-82 | 49 | 208 | 10 | 169 | Protein StWhy2 |
3n1k_A | 1e-82 | 49 | 208 | 10 | 169 | protein StWhy2 |
3n1l_A | 1e-82 | 49 | 208 | 10 | 169 | protein StWhy2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678364418 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095185.1 | 1e-101 | single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | D9J034 | 3e-85 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2G9G9W4 | 2e-98 | A0A2G9G9W4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C01402.1.p | 3e-98 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-77 | WHIRLY 2 |