PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678363783
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 328aa    MW: 35774.2 Da    PI: 6.8907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678363783genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172974147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed ll ++v  +G+++W++Iar ++ gR++k+c++rw + 
        678363783 29 KGPWSPDEDALLSQLVSNFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 74
                     79******************************.***********985 PP

2Myb_DNA-binding58.41.6e-1881125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd  +++a++ +G++ W++Iar ++ gRt++ +k++w++ 
        678363783  81 RKPFTEEEDRMIIEAHAIHGNK-WASIARLFP-GRTDNAIKNHWNST 125
                      789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5672475IPR017930Myb domain
SuperFamilySSF466892.01E-3126122IPR009057Homeodomain-like
SMARTSM007177.8E-152877IPR001005SANT/Myb domain
PfamPF002494.1E-172974IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-263082IPR009057Homeodomain-like
CDDcd001672.49E-143173No hitNo description
PROSITE profilePS5129428.30676130IPR017930Myb domain
SMARTSM007174.1E-1880128IPR001005SANT/Myb domain
PfamPF002492.2E-1681125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2483129IPR009057Homeodomain-like
CDDcd001673.87E-1483126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEMESKEHGA PVVIGGRAPM NKRAHDRVKG PWSPDEDALL SQLVSNFGPR NWSLIARGIP  60
GRSGKSCRLR WCNQLDPSVK RKPFTEEEDR MIIEAHAIHG NKWASIARLF PGRTDNAIKN  120
HWNSTLRRRC GDFLKPKLET RTAMEDGAGS EQPRPTSEET PSYGEAGSFK SVEENHVALV  180
EQEKDIVIEE SSGQHTISHP VPRVSAFSVY NPISGSAKAI PPPLIATCSS SSPQISNINL  240
GICRLLEEVN RDRLVPIHCG HGCCRTPNEA SPAGSLLGPE FSDYAESPPF SCHELAALAA  300
DISSVAWARS GLDSITRSDS EVAARVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-42261304108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678363783
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.11e-129transcription factor MYB1
SwissprotQ425751e-83MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A059PSP01e-123A0A059PSP0_SALMI; MYB-related transcription factor
STRINGXP_004162756.11e-112(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.16e-86myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]