PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678363687
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 23005.2 Da    PI: 9.7068
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678363687genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF915.8e-29958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krienk+nrqvtf+kRr g+lKKA+E+SvLCdaev viifss++kl ey+
  678363687  9 KRIENKINRQVTFTKRRSGLLKKAHEISVLCDAEVGVIIFSSKDKLSEYA 58
               79***********************************************8 PP
2K-box79.86.7e-27781754100
      K-box   4 ssgksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++++ + +++ s++ elakLk+++e +q +e Rh+ Ge++e+Ls++eL +Le++L+ slk+iR++K++++ e+i+ l kk k+lq+ n+ L kk++e
  678363687  78 KQTNESKMETQTSWSIELAKLKARLEIMQtNESRHYNGEEIENLSMRELLSLEHRLDASLKHIRTRKDQVMNESISILHKKSKALQQGNNLLAKKVKE 175
                5666677778899****************9899**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.586161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-32291IPR002100Transcription factor, MADS-box
CDDcd002651.54E-36274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2086173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.32888179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FTKRRSGLLK KAHEISVLCD AEVGVIIFSS KDKLSEYANH  60
SCMERILERY ERCSCAEKQT NESKMETQTS WSIELAKLKA RLEIMQTNES RHYNGEEIEN  120
LSMRELLSLE HRLDASLKHI RTRKDQVMNE SISILHKKSK ALQQGNNLLA KKVKEDEEQV  180
QFTALEQQNR NTSSSDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21187187Myocyte-specific enhancer factor 2B
1tqe_Q1e-21187187Myocyte-specific enhancer factor 2B
1tqe_R1e-21187187Myocyte-specific enhancer factor 2B
1tqe_S1e-21187187Myocyte-specific enhancer factor 2B
6c9l_A1e-21187187Myocyte-specific enhancer factor 2B
6c9l_B1e-21187187Myocyte-specific enhancer factor 2B
6c9l_C1e-21187187Myocyte-specific enhancer factor 2B
6c9l_D1e-21187187Myocyte-specific enhancer factor 2B
6c9l_E1e-21187187Myocyte-specific enhancer factor 2B
6c9l_F1e-21187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678363687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.17e-92truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.17e-92truncated transcription factor CAULIFLOWER A
SwissprotQ424292e-85AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5721e-89A0A2G9H572_9LAMI; MADS box transcription factor
STRINGSolyc06g069430.2.18e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-75AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]