PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678362400
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 689aa    MW: 75281.8 Da    PI: 6.9254
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678362400genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.6e-24112213199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv+ + L +gD++vF+  + +++ l+
  678362400 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldynADPPVQ--TIIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKSLVAGDSIVFM--RAENGDLC 207
                89****************************996445444..8************************************************..4488999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  678362400 208 VGIRRA 213
                ***997 PP
2Auxin_resp105.85.1e-35273356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++Fev+Y+Prast++F+vk+++v+ al++ +++GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
   678362400 273 AATLAAGGQPFEVIYYPRASTPDFCVKASQVKVALQICWAPGMRFKMAFETEDSSRISWfMGTISSVKVADPILWPDSPWRLLQ 356
                 6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-38103215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29107214IPR015300DNA-binding pseudobarrel domain
CDDcd100176.96E-22111212No hitNo description
PROSITE profilePS5086313.422112214IPR003340B3 DNA binding domain
PfamPF023622.4E-22112213IPR003340B3 DNA binding domain
SMARTSM010192.8E-22112214IPR003340B3 DNA binding domain
PfamPF065071.3E-30273356IPR010525Auxin response factor
PROSITE profilePS5174515.533599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MESKEENCLD SQLWHACAGS MVQMPSVNSS VFYFPQGHSE HASGYVDFRK CPRVPAFIPC  60
RVSAVKFLAD RETDEVFAKI RLVPINGNEL GFDDNEGATV SGSGNQDKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYNADPPVQ TIIAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNHKSL VAGDSIVFMR AENGDLCVGI RRAKKGIGSG LEMPTWWNSA CGNSGMQYGG  240
ISTFLGEDEG KLSRHNESWV NRGRVKAEDV VQAATLAAGG QPFEVIYYPR ASTPDFCVKA  300
SQVKVALQIC WAPGMRFKMA FETEDSSRIS WFMGTISSVK VADPILWPDS PWRLLQVSWD  360
EPDLLQNVKR VSPWLVELVS NVHGIPFSFS HPGKKIRLPH QEFPLGGQIF MPSFSSQHVV  420
RPNNIFGCVP ISSPPAGMQG ARHAQYGFSA PYFQQSKQPS PISSACFMPL DSFPLSSQAS  480
NPAVPIHERD ENISCLLTMG NSAQQYTKSD DSKSPSAPTT ASFVLFGQPI LTDTKIQHGC  540
FNDAAAAASP TRTSNSSSDN KFGNASDGSG SGSGFALYQN KTRVPSASVS PSPCEALTDG  600
LCKVFLESDD VGRTVDLSSV GCYEELHSKL QDLFSIEADK TSNLVVYRDA TGAIRKLGDE  660
PFLTFMRSAR RLTILAEPRS NNDVINLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80937751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678362400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GAL70.0A0A2G9GAL7_9LAMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]