PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678361766

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 236aa MW: 27509 Da PI: 6.7822

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678361766	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175	2.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yL++k++g +el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v s +++ 678361766 6 LPPGFRFHPTDEELVNYYLRRKIHGLGIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSS-QNR 103 79**************************.99**********84335556888*********************************9.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLv+y+grap+g++tdWvmheyrl 678361766 104 SIGMKKTLVYYRGRAPHGVRTDWVMHEYRL 133 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.801	6	156	IPR003441	NAC domain
Pfam	PF02365	5.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLRRKIHG LGIELDIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSS QNRSIGMKKT LVYYRGRAPH 120 GVRTDWVMHE YRLNDKDSEE TSVIQDSCVL CRVFKKNVLS SKVEEQGHSR NMSFLNYLQG 180 PVYSNTHETL LLDFPVASST TVCSMEEEGN KDESWMQFIT DDVWCGEQVS QLNFIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-56	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678361766

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072043.2	1e-133	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	1e-85	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A068TRH5	1e-129	A0A068TRH5_COFCA; Uncharacterized protein
STRING	Migut.O00243.1.p	1e-127	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-116	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]