PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678361441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 28065 Da PI: 5.4523 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 57 | 96 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l +++++ G++ W Ia+ ++ g+t+ ++k w+ 678361441 57 FTPQEEDLVIQLHAAIGSR-WLIIAQQLQ-GKTESDVKILWN 96 8******************.*********.*******97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.77 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-4 | 53 | 101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.91E-9 | 56 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 57 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.68E-4 | 57 | 99 | No hit | No description |
Pfam | PF00249 | 8.5E-7 | 57 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MKMVKKGPLD EPVYATRTGI WISRSGQRRR DGNARGKFGK SDSKKQGLLP WQRTCFFTPQ 60 EEDLVIQLHA AIGSRWLIIA QQLQGKTESD VKILWNRKLR KKLSTMGIDP VTHKPFSQIL 120 ADYGNIGAMP KPHQTLPVDF KPPNAELYSQ LEALNLVMRQ KIESGEEWHI QEITKSSFEW 180 TDFLVEDVSG GTEEEEETGA MDNMKSSGFL LDEVFEACSA SSFVDAILER NKEQMFPLFP 240 LIGDEPF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678361441 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071760.1 | 4e-50 | transcription factor MYB35-like isoform X2 | ||||
TrEMBL | A0A2G9G209 | 3e-48 | A0A2G9G209_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.I00107.1.p | 2e-39 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12348 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18960.1 | 3e-28 | MYB_related family protein |