PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678359764
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 223aa    MW: 24747.8 Da    PI: 4.884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678359764genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182777155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr ++ +g+Wv+eIr p++   ++r++lg++ tae+Aa+a++ a+ +++g
  678359764 27 PDYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTYPTAEMAARAHDVAAISIKG 77
               68*****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.29E-332787No hitNo description
PfamPF008472.6E-132777IPR001471AP2/ERF domain
SMARTSM003804.2E-392891IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-212886IPR016177DNA-binding domain
PROSITE profilePS5103223.2482885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-322886IPR001471AP2/ERF domain
PRINTSPR003671.2E-102940IPR001471AP2/ERF domain
PRINTSPR003671.2E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEPQLQPFAG GDQRPRKRPT DCGTKHPDYR GVRMRSWGKW VSEIRQPRKK TRIWLGTYPT  60
AEMAARAHDV AAISIKGSSA VLNFPHLKDS LPRPASLSPR DVQEAAAKAA AMPVEDFTIT  120
PPLPLAAHTS PTSVSSSREA NDEDDDLGEL IELPSLKEID ECRSEFTQEI GSAEGWMQPP  180
WWATAVEKDL CEYFAEQVGG GGESLISITC SCSFETTESW WMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-202286873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678359764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072408.14e-61dehydration-responsive element-binding protein 3
RefseqXP_022843034.13e-61dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9M0801e-49ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A2G9HTV68e-67A0A2G9HTV6_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000067519e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]