PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678359487
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 352aa    MW: 38313.7 Da    PI: 8.8948
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678359487genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92.1e-2486130145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  678359487  86 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 130
                79****************************************986 PP
2QLQ64.62.5e-222559236
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i+
  678359487 25 PFTAGQWQELEHQAMIYKYLVAGLPVPPDLVMPIR 59
               9*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-112460IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.8E-172559IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2262560IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.83186130IPR014977WRC domain
PfamPF088796.5E-2187129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSGTASTSLA IGGGRDGVYG GYRPPFTAGQ WQELEHQAMI YKYLVAGLPV PPDLVMPIRH  60
SFDAISARLF HHPSLNYVSY YGKKFDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMHRG  120
RNRSRKPVES QSTSQSLPAA TAHISSGSAA NTISFQGSGS GSFQNMPLYS VGCSEGGGSM  180
SKLQMENISF GTAAKELRYI PGLSPDADDH IFASGPSSAV GSLGAGFGAG ANSWRLMTSH  240
ASSTSLLKPK SDSMLRNGDL LNEQNMAHAF DTMDSKQRPQ HCFLQNDILS GKKEPQPVHP  300
FFREWPTTKK SWSMDVEDAT GKNIFSSTQL SISTPRDSSD FSSENGDMPS SK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678359487
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3031708e-41AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence.
GenBankAY3031718e-41AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553030.11e-161growth-regulating factor 4-like isoform X1
RefseqXP_020553031.11e-161growth-regulating factor 4-like isoform X1
RefseqXP_020553032.11e-161growth-regulating factor 4-like isoform X1
RefseqXP_020553033.11e-161growth-regulating factor 4-like isoform X1
RefseqXP_020553034.11e-161growth-regulating factor 4-like isoform X1
TrEMBLA0A1U8ETD51e-132A0A1U8ETD5_CAPAN; growth-regulating factor 4-like
STRINGXP_009605688.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-47growth-regulating factor 5