PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678358105
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 224aa    MW: 26371.7 Da    PI: 9.8123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678358105genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-13543140
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     rg W + Ede+l ++v+++G+++W++Ia++++ gR+++++
        678358105  5 RGHWRPAEDEKLRQLVAKYGPHNWNAIAEKLQ-GRSGEDL 43
                     899*****************************.****987 PP
2Myb_DNA-binding52.88.8e-1793136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+ E+e+l+ +++ +G++ W+ Iar+++ gRt++ +k++w+ 
        678358105  93 RSPFTAGEEERLLACHQIYGNR-WAVIARYFP-GRTDNAVKNHWHV 136
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.311159IPR017930Myb domain
SMARTSM007179.5E-10453IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-10445IPR009057Homeodomain-like
PfamPF002494.5E-12542IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-23639IPR009057Homeodomain-like
CDDcd001676.83E-10851No hitNo description
Gene3DG3DSA:1.10.10.603.7E-237694IPR009057Homeodomain-like
SuperFamilySSF466891.75E-2276147IPR009057Homeodomain-like
PROSITE profilePS5129424.52988142IPR017930Myb domain
SMARTSM007173.4E-1492140IPR001005SANT/Myb domain
PfamPF002491.0E-1393135IPR001005SANT/Myb domain
CDDcd001671.49E-995135No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2095141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVCTRGHWRP AEDEKLRQLV AKYGPHNWNA IAEKLQGRSG EDLFLFGQER WDIQLHSFLG  60
FDVHHHLYLH RIIFCRKSCR LRWFNQLDPR INRSPFTAGE EERLLACHQI YGNRWAVIAR  120
YFPGRTDNAV KNHWHVIMAR KCRAKSKSYN TSSEQQRPHN TKLHHTIVHQ DRSSKHVRFY  180
DFLQVRKTEA DGDEEEAEWS SQSKKAAVQF IDFLSLGSSS SSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2431425108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678358105
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015096.11e-73transcription factor MYB52
SwissprotQ6R0C41e-60MYB52_ARATH; Transcription factor MYB52
TrEMBLB9SWD83e-70B9SWD8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002530307.16e-71(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-60myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]