PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678358070

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 239aa MW: 28080.4 Da PI: 4.6566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678358070	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.4e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s +++ 678358070 6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTS-QNR 103 79**************************.99**********84335556888**********************************.889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+y+grap+g +tdWvmheyrl 678358070 104 SVGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	6	156	IPR003441	NAC domain
Pfam	PF02365	5.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELDIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTS QNRSVGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKDMEE ASGIQDSYAL CRVFKKNVLI SEVEEQGLSR DLSFLDYMQG 180 PMYPTEHETQ SPDFPLASSS TICNIEEEDR DENKDESWMQ FITDDVWCGE EVSQLNFIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-55	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678358070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072043.2	1e-143	NAC domain-containing protein 86 isoform X2
Refseq	XP_022889940.1	1e-143	NAC domain-containing protein 45 isoform X2
Swissprot	A4VCM0	6e-88	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A068TRH5	1e-135	A0A068TRH5_COFCA; Uncharacterized protein
STRING	Migut.O00243.1.p	1e-133	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-120	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]