PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678357849
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 299aa    MW: 32902.9 Da    PI: 5.1488
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678357849genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19211245135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  678357849 211 CRHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 245
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-757296IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78205241IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-15205259IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14206269No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14209243IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.59E-16210258No hitNo description
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
PfamPF003202.6E-17211245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MESLNSVQEI VAVDDSNDVS GDDLFVDQLL DFSQGFYDAE LPSQKLEEVD EEKDKIFPVS  60
EKPPAPLGNV LSSDTDLDPL IQPVSGKETV PEVDELESLE WLSHFVEDTF SDFSLTGKLP  120
EKMDAPPQEK ETVVSVVQTK ARTKRPRAGT RVCPILSSPP ADSTTSCSSS SSSSPTSFIS  180
QRITSEKPLT KKTKTQPSED SGATGGQTRK CRHCGVTKTP QWRAGPLGSK TLCNACGVRY  240
KSGRLLPEYR PACSPTFSSE LHSNNHRKVM EMRRRKEMGM EAGGEVQVFE FILQVGKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678357849
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.18e-81GATA transcription factor 5-like
SwissprotQ9FH576e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2Z7BUI72e-75A0A2Z7BUI7_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p7e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-45GATA transcription factor 5