PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678357496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Dof | ||||||||
Protein Properties | Length: 454aa MW: 50452.9 Da PI: 8.2737 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 6.8e-38 | 176 | 234 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e al+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg++k+kk+ 678357496 176 EPALRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCQKSKKV 234 56789***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.9E-32 | 178 | 233 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 178 | 233 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 179 | 233 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 181 | 217 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MTVQCNGESN DPKTVSNNTN QSSVAQIKQL HTTYTLYRSF KVHDCTHGSS SNEAETKPTV 60 QEWRNAQGAE SALFEVYGEG KKRWEGVKRD VTEKEGDKGP EDGQVPAAIK IIFSPLPVLF 120 PSFSELKLIE RVGEFIRHCC AELIHYQPTD RIILPSGYQM SDSKNQRKKR ADRGQEPALR 180 CPRCDSPNTK FCYYNNYSLS QPRHFCKTCR RYWTKGGALR NVPIGGGCQK SKKVKGSSRL 240 VLDSKIATTD MGGLRCFQVI PPGAMDMQLN FPRLGPANPG LCCPFPSPNP CLSFDPNSEG 300 TSSSSMGLAF PFSCSAFKPL ERTNSAGFQE PGPYNRNLES ELQWKLQQQR LAMLVSGDYG 360 KENPSLPLPS IEPATGIQKM QPIFFHNLEI SNMKHDVTGS TRRDDTTANP STEWFLEHPY 420 AAQVAPNLAT NTLNPNETTH WSTNEGPFGL ISGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678357496 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021274371.1 | 4e-74 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A061DI28 | 3e-72 | A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein | ||||
STRING | EOX91892 | 4e-73 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5242 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 2e-41 | Dof family protein |