PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678357201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28834.5 Da PI: 7.0086 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.7e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF P+deelv++yL kk+++++l ++ e+d++ +ePw Lp +k +++ewyfFs rd+kyatg r+nrat++gyWkatgkd++v++k + + 678357201 10 LPPGFRFYPSDEELVCHYLYKKTRNEELVR-GTLVEIDLHVCEPWMLPDVAKLNSNEWYFFSFRDRKYATGYRTNRATTTGYWKATGKDRPVVDKrVSGV 108 79*************************888.78***************87778899*************************************9865678 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy++rapkg+kt W+mhe+rle 678357201 109 VGMRKTLVFYRNRAPKGVKTGWIMHEFRLE 138 ***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.244 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGLRDIGQTL PPGFRFYPSD EELVCHYLYK KTRNEELVRG TLVEIDLHVC EPWMLPDVAK 60 LNSNEWYFFS FRDRKYATGY RTNRATTTGY WKATGKDRPV VDKRVSGVVG MRKTLVFYRN 120 RAPKGVKTGW IMHEFRLENP HLPPKEDWVL CRVFHKSRSS PAEYTSKYLN DHQPQGASSS 180 HLDMGASVLS TGLNHGHDIP PLSSPNTGYT VSKIMADAKC EDEYGFLLDF FTPDGLGMDD 240 ASNFEDDGSS VFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 9 | 160 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 9 | 160 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 9 | 160 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 9 | 160 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 9 | 160 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 9 | 160 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 9 | 160 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678357201 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111304.1 | 1e-108 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2G9HEI9 | 1e-107 | A0A2G9HEI9_9LAMI; Uncharacterized protein | ||||
STRING | EOX94424 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-89 | NAC domain containing protein 74 |