PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678355817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26697.4 Da PI: 7.5683 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.9 | 4.1e-49 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF+P+d+elv++yL kk+++++l++ ++ e+d++++ePw Lp +k +++ewyfFs rd+ky tg r+nrat++gyWkatgkd++v+++ ++ + 678355817 10 LPPGFRFSPSDQELVCHYLYKKIANQHLPT-GTLVEIDLHTCEPWMLPDVAKLNSEEWYFFSFRDRKYVTGFRANRATARGYWKATGKDRPVVDAaTRGV 108 79***************************9.88***************87778899*************************************9877788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy+ rap+g+kt W++he+rle 678355817 109 VGMRKTLVFYNHRAPNGVKTGWILHEFRLE 138 ***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-59 | 9 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGLKDIGETL PPGFRFSPSD QELVCHYLYK KIANQHLPTG TLVEIDLHTC EPWMLPDVAK 60 LNSEEWYFFS FRDRKYVTGF RANRATARGY WKATGKDRPV VDAATRGVVG MRKTLVFYNH 120 RAPNGVKTGW ILHEFRLENP GLPPKEDWVL CRVFKKSRSP PWEGPTGRLI APRDDSGEAT 180 SSDAPLIKPG IGHPAHLTAA PSGPKCEEDY GFLLDLCDPN EIGFRHPTIG DDSSSVFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678355817 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837084.1 | 4e-96 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 3e-57 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2Z7BHR2 | 5e-96 | A0A2Z7BHR2_9LAMI; NAC domain-containing protein 21/22-like | ||||
STRING | Migut.D00437.1.p | 1e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-83 | NAC domain containing protein 74 |