PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678354515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 27375.3 Da PI: 6.2865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.5e-13 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky 678354515 107 PWSEQEHRQFLLGLRKFGKGDWRNISRNFVTTRTPTQVASHAQKY 151 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.288 | 26 | 81 | IPR017884 | SANT domain |
SMART | SM00717 | 6.2E-7 | 27 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-5 | 30 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-6 | 30 | 77 | No hit | No description |
SuperFamily | SSF46689 | 8.97E-11 | 30 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.795 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.47E-16 | 101 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-17 | 104 | 155 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.5E-11 | 104 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 104 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-11 | 107 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.15E-10 | 107 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MNRDMEAASS CHSSLYWVLE GEEEEASAAR WSAEDNKKFE NALAYFDQDT PDRWHNVASM 60 VPGKTVDDVI KQYRDLVRDV RDIEDGRIPI PGYVNNGEVL GRRKGVPWSE QEHRQFLLGL 120 RKFGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRQHSGDK DKKRSSIHDI TMAAIDDANS 180 SQKQTPDSGG AREAEAMGFI SPEAMAHFQL HSSEFGQMVV DADSFPHLGL HHPPPFPVNP 240 AGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-19 | 31 | 97 | 11 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678354515 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094978.1 | 5e-78 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 8e-65 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A4D9AMA0 | 3e-81 | A0A4D9AMA0_SALSN; Uncharacterized protein | ||||
STRING | Solyc09g014250.2.1 | 5e-77 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-71 | MYB family protein |
Publications ? help Back to Top | |||
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