PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678353322
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 373aa    MW: 41294.8 Da    PI: 4.5026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678353322genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19119168255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ +++++g
  678353322 119 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTFNTAEEAARAYDEEARRIRG 168
                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.85E-33119178No hitNo description
PROSITE profilePS5103223.828119176IPR001471AP2/ERF domain
SMARTSM003806.3E-39119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32119177IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22119177IPR016177DNA-binding domain
PfamPF008477.8E-12120168IPR001471AP2/ERF domain
PRINTSPR003671.1E-11120131IPR001471AP2/ERF domain
PRINTSPR003671.1E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MCGGAIISDI LPPVSRSSRR LTAALLWGAD PGELAGKANP GDYHSKPLRS PPVVDLDDDF  60
EADFQDFEDH SDVDEFDAKG SFHFATSKTS ALKGGLNSPD SCESDEECEK SSKRKRKNQY  120
RGIRQRPWGK WAAEIRDPKK GVRVWLGTFN TAEEAARAYD EEARRIRGKK AKVNFPEDAP  180
LSAARGDSKA DSQKVTRKEN RDSVYPPAKE MEYMKMLKNS YCESFTFTEE KPEIKPKGFN  240
VAFAPTANVE LETRTPPDAY FSPDQGNNSF YCSDFGWGEM CPTAPEISTV IPADIEGGQA  300
QFMGDDCPAM PCNENSNVTG FDTQMKMYQA PYLDNNWDST IDALLEGGAI QNGGHSMDLW  360
SFDDVLDIAG CAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678353322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-152ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2G9GX081e-151A0A2G9GX08_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-45related to AP2 12