PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678352058
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 574aa    MW: 63592.8 Da    PI: 5.0907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678352058genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.11.7e-1311985641373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++++la+al++++   a ++  +m+++a+yf+eALa+r++r    +y  ++ +++   +   + + +  f+e++P+lkf+h+taNq
  678352058 198 LVHTLMACAEAVQEENFKLAEALVKNIAFFAVSQTGAMRKVATYFAEALARRIYR----IY-PMNHQPQ---DYHFTDMLQMHFYETCPYLKFAHFTANQ 289
                689****************************************************....55.3333333...34444445556***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aIlea++g+++v +iDf+++qG+QWpaLlqaLa R++gpp++R+Tg+g+p++++++ l+e+g rLa+fA++++v+fe++ +va++l+dl+   L+++++E
  678352058 290 AILEAFAGKSHVRVIDFSMKQGMQWPALLQALAFRQGGPPTFRLTGIGPPSPDDNDYLHEVGFRLAQFAKTINVQFEYRGFVANSLADLDALLLDIREDE 389
                **************************************************************************************************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpreseerikvErellgre 293
                ++aVn++++lh+ll++++++++    vL+++++++P++++vveqea+hns+ Fl+rf+eal+yys+lfdsle+        + + s++++++++++lg++
  678352058 390 TVAVNSIFELHQLLAKPGAIDK----VLRVIREVKPEILTVVEQEANHNSSCFLDRFTEALHYYSTLFDSLETCdggggpdV-ALSRKNKMMSEAYLGQQ 484
                **************99999999....*********************************************99867765543.3458889999999**** PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                i nvvacega+r+erhe+l +Wr+r+++aGF+pv+l+++++kqa +ll+ +++dgy+vee++g+l+lgW++rpL+s++aW
  678352058 485 IFNVVACEGADRIERHESLIQWRNRFNSAGFQPVHLGSNVYKQAIMLLAVFGGDGYSVEENNGCLMLGWHSRPLISTTAW 564
                ******************************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.8E-2338113No hitNo description
PfamPF120411.7E-2338106IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098563.877172545IPR005202Transcription factor GRAS
PfamPF035145.9E-129198564IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MKRENLVSED NFSGSGSSSF MDEGRMRQRG LEEGGIDDEL FGVLGYKVRA SDMADVAQKI  60
HQIEAAMGDA AAGGYSQLGS MDDTLHCNPS DLSSWLEYML SGLGPLPELD FDSSLDLFLE  120
SSAADSNRGL AAADLDFGSD LIAIPGKAVF ANTQFHQPSP ESRNQHQPPA KKAKTLRGEP  180
SPPRRSILID SQENGIRLVH TLMACAEAVQ EENFKLAEAL VKNIAFFAVS QTGAMRKVAT  240
YFAEALARRI YRIYPMNHQP QDYHFTDMLQ MHFYETCPYL KFAHFTANQA ILEAFAGKSH  300
VRVIDFSMKQ GMQWPALLQA LAFRQGGPPT FRLTGIGPPS PDDNDYLHEV GFRLAQFAKT  360
INVQFEYRGF VANSLADLDA LLLDIREDET VAVNSIFELH QLLAKPGAID KVLRVIREVK  420
PEILTVVEQE ANHNSSCFLD RFTEALHYYS TLFDSLETCD GGGGPDVALS RKNKMMSEAY  480
LGQQIFNVVA CEGADRIERH ESLIQWRNRF NSAGFQPVHL GSNVYKQAIM LLAVFGGDGY  540
SVEENNGCLM LGWHSRPLIS TTAWAMSDAS SARN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-661835642377Protein SCARECROW
5b3h_D6e-661835642377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678352058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G9HQV20.0A0A2G9HQV2_9LAMI; Uncharacterized protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein