PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678350484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 19372.3 Da PI: 4.6451 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 16 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g++v eIr + r r++lg+++tae+Aa+a +aa ++l+g+ 678350484 16 KYKGVRKRK-WGKYVTEIRLS---NSRERIWLGSYDTAEKAARAFDAALLCLRGP 66 8*****999.**********4...225*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.92E-26 | 16 | 75 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-19 | 16 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-29 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.442 | 16 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-28 | 16 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-11 | 16 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSSGEESSPA AEEQVKYKGV RKRKWGKYVT EIRLSNSRER IWLGSYDTAE KAARAFDAAL 60 LCLRGPHAKF NFPDDPPSFA AAPGMSPAEI QSMAQQYANR FPTHRAEEEE EKAENSKETM 120 DWSFLGDFDL GKRSGISGIS DFELFHDPEG MNTPTYFGLP HYRNYDDTDD E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 13 | 75 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 23 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678350484 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856083.1 | 1e-53 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 4e-38 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2G9H4V5 | 3e-50 | A0A2G9H4V5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.A00330.1.p | 1e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-33 | ERF family protein |
Publications ? help Back to Top | |||
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