PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678350369
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 537aa    MW: 60726.8 Da    PI: 4.423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678350369genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09395435446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      W++ + el+++av+q+G++ ++ I + ++  +t+ q+k+++ k
        678350369 395 WSKRDTELFYEAVQQFGTD-FSMIQQLFP-ELTRHQIKLKYKK 435
                      *******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.0E-27385468No hitNo description
SMARTSM007174.5E-5391439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-4394436IPR009057Homeodomain-like
SuperFamilySSF466892.92E-9394442IPR009057Homeodomain-like
CDDcd001675.68E-5395435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDIDVDPFDD ITGEAANNAK GTSKFQPKAK FRPEANIPPS ESVVVNDSGL RGLGTGEADA  60
LNLGESLASS CVGYSKTDIQ ELTTGEMEVL RSVCLKESAS DSGRIAGGFQ IGLDVRMREE  120
TCEATEPISC SPNPYEINEA VKDSISTLQQ DDVLDLSALG FTDLLTGEDV MGYDSGHAND  180
RVWNEEERLD HSQEQIASAG PQDKEIVGSL RRKSQPIRLV DELDDEVLAS LEVSGECLPR  240
IVEEGNSIDT EYQLENEENR KSIHSSTKHA NDKGLTAAKR KKPDEATPVT NQKPKRFPHS  300
TRRRRVNKAL LEIPEEEIDY QNIPLRDIIL LAEHKEKQMK KEQAETGVSQ IRNSENGASR  360
VEGENPDAQE NPDLRDTTLY FNYQTYMNKP RTIQWSKRDT ELFYEAVQQF GTDFSMIQQL  420
FPELTRHQIK LKYKKEEKRH PMRLQQALSS RSKDHFHFKN VIERLKKVAA EENRHAEKED  480
SEMEERSFSQ ANDEEANEEE NEGENGYAVP SEVLSKEEGQ EEEALEADED YFQYTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C1e-1337747867163Transcription factor TFIIIB component B'' homolog
5n9g_H1e-1337747867163Transcription factor TFIIIB component B'' homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMap678350369
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-45MYB_related family protein