PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678348406
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 183aa    MW: 20275 Da    PI: 8.6879
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678348406genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.3e-31111361100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..........................edamsslvyeAearardPvy 74 
                +CaaCk+lrr+C++dCv+apyfpa++p++fa+vh+++Gasnv k+l+ ++++                             +a++sl+ eA  r+ dPvy
  678348406  11 RCAACKHLRRRCPSDCVFAPYFPANDPRRFAYVHRIYGASNVAKILQVIDPSATyffrrifdsgfefwlmlkqglpvsvrGEAADSLYKEAYYRVMDPVY 110
                6************************************************999988999*********************99******************* PP

     DUF260  75 Gavgvilklqqqleqlkaelallkee 100
                G+vg++ +l+qq+ +++ +la++++ 
  678348406 111 GVVGMVASLRQQIYTAQCQLARVHAD 136
                *********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.33510137IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-211162IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-979134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNSSSSSSSS RCAACKHLRR RCPSDCVFAP YFPANDPRRF AYVHRIYGAS NVAKILQVID  60
PSATYFFRRI FDSGFEFWLM LKQGLPVSVR GEAADSLYKE AYYRVMDPVY GVVGMVASLR  120
QQIYTAQCQL ARVHADITFA AVAAGSDPAM SMTPAVTPAM HFPEQNGGSF SSSSYYDVSS  180
WLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2541374111LOB family transfactor Ramosa2.1
5ly0_B2e-2541374111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678348406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098999.12e-54LOB domain-containing protein 23-like
TrEMBLA0A2G9G4582e-52A0A2G9G458_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-37LOB domain-containing protein 24