PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678348308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 28572.8 Da PI: 8.1281 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.1 | 1.4e-29 | 44 | 152 | 3 | 103 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........kaaksa 94 g+kdrhsk++T +g+RdRR+Rls+++a++++ Lqd+LG+ ++sk ++WLl + k++i++l+ ++ +++++ +s +as+ s + ++++++ 678348308 44 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYSLQDRLGLGQPSKVVDWLLDATKHEIDKLPPLPLLPETFTAYHSAAAAASELSTHfltsygvkEKENEE 143 78*************************************************************5555544422222222222222222333444222222 PP TCP 95 akskksqks 103 + +q+s 678348308 144 GFGMLQQQS 152 222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.107 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-27 | 45 | 151 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MMMNQAKNEE DSVSEQGKLP CSSSSRQWSS YKNPRIVRVS RTFGGKDRHS KVCTVRGLRD 60 RRIRLSVPTA IQLYSLQDRL GLGQPSKVVD WLLDATKHEI DKLPPLPLLP ETFTAYHSAA 120 AAASELSTHF LTSYGVKEKE NEEGFGMLQQ QSNNSTSTSL IPITNFQNPY LHWDLQNGAH 180 FGFNETQNPN QTSLYFCSSE VTSATATPTP SFLLSSSQLS DSGLGGQNHQ SVSPTTLHFL 240 RQLNDAQAAR PDHHRNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678348308 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087359.1 | 9e-60 | transcription factor TCP5 | ||||
TrEMBL | A0A2G9H524 | 2e-54 | A0A2G9H524_9LAMI; Uncharacterized protein | ||||
STRING | XP_009795262.1 | 8e-54 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |