PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345813
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 321aa    MW: 35226.6 Da    PI: 8.0243
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345813genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.79e-20240274135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  678345813 240 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 274
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-7743321IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.374234270IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-16234288IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14237298No hitNo description
Gene3DG3DSA:3.30.50.104.9E-15238272IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.39E-15239287No hitNo description
PfamPF003201.6E-17240274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MHYRPRYNFF PTPVLSALCF SLSIIATQGM DCLLGAPGGL CKTETPAAAS AYSGPGDDLF  60
VNELLDFSHW LSDAGEPVQK LEESGQNVQQ DNVVKPPPLS QEKQPKHSNA ILSESEHNSL  120
PDSVFMPPEE SLESLEWLSH FVEDSFSDFS LTGKLPPKPL QTPPSTESPL KDKPSFVSGV  180
QTKARTKRPR HVWPVLSHSF PESTATSSSS SSSSASSFIS QKKKRKPSED SGAAVQARRC  240
SHCGVTKTPQ WRAGPLGSKT LCNACGVRYK SGRLLPEYRP ACSPTFSSEL HSNNHRKVME  300
MRRKKETETE TETEAAKVTS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226KKKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.18e-96GATA transcription factor 5-like
SwissprotQ9FH571e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9HGJ91e-87A0A2G9HGJ9_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p5e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5