PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345587
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 706aa    MW: 78719.1 Da    PI: 9.0278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345587genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07598647147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
        678345587 598 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFenaDHRTYVDLKDKWKTL 647
                      6789999*******************97666679*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.24E-7419504IPR029071Ubiquitin-related domain
PROSITE profilePS500539.003424494IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.906.4E-4426493No hitNo description
CDDcd017696.91E-4428494No hitNo description
PROSITE profilePS5129417.288593652IPR017930Myb domain
SMARTSM007171.1E-7597650IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-10598648IPR009057Homeodomain-like
SuperFamilySSF466894.4E-15599679IPR009057Homeodomain-like
CDDcd116606.62E-17599649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MKSRGHVAGF GVDNTVALVQ RSGPSIFFSD PYPDSFSPTK AVYQDWAGYR TIMPLSPDDP  60
VAATERAPRS MRVISCFQCM LVLFSHFKND HIYPQRKKSG EDEKLRAFEL LASVAGKLLE  120
ESEGSASSNA AEIKLNLVGG NEKEIPNIGK ASFKCENVDR GSCDESVFFP ETSIQDHSYS  180
PIVSGTSEKL DSDMKLGVRE GKSSKNIDIS NTIGPLYIDE QLHLKEEYGS EVRLADVKGE  240
IEDLSVANGL ALKDHVEGFV TSSLNSESSV QLPLYRELFP CGLLQKHRNN VKLGIRDDDE  300
NFPGFNKRFI QRTFRPQPRT GHRRVRKMMT SRYWKTAPKM KDCERLYTTT SQGMNSFYKC  360
RRSVYSRERF QRAPIKKRGL SDHRFSVAFE CQDNSSSVSK IPGKVGDGSS TYMKVHSKSK  420
ERHVAVSIKS FKVPELYFEV PESATVGSLK RTVLEEVTAI LGRGIRVGIV FQGKNIRDDN  480
RTLLQVGISQ YSDLDNLGFT LEPSLAHLPA NPKPEPDSVS PATPVIGDSD PIKQDSVANK  540
ELMSSFSNLR PADDNDMSID GTVPQSMALV PVADALAPVL INQKAKPKRS EVAPRRTRRP  600
FSVAEVEALV EAVEQLGTGR WRDVKMRAFE NADHRTYVDL KDKWKTLVHT ASISPQQRRG  660
EPVPHELLNR VLSAHSYWSH HQSKHGKLQA LEPPRIADIQ EAAAGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-555817062121Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077209.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077212.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077213.10.0telomere repeat-binding protein 3 isoform X1
TrEMBLS8CDN00.0S8CDN0_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.11e-55TRF-like 4