PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678345248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 338aa MW: 36517.2 Da PI: 11.2655 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.1 | 3.3e-34 | 108 | 303 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.............. 88 +kk + +++ kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i++ tgt++++as+++ +ss +s++s++ 678345248 108 VKKLSAKDRNNKVDGRGRRVRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIATTGTGTTPASFSNVSSSGTRSSSPSISvsldhkpishsllt 207 799*****************************************************************88844444444444444466777777788888 PP TCP 89 .......................................................................kaaksaakskksqksaasalnlakesr 115 ++++s+++++++++s++ l ++++++ 678345248 208 pspapfilgkrirphdagihhrergfeesasttaatnsavatggfwalparpdfgqvwsftphpeilvaasRNSPSSHHHQQQTHSSS--LRFSQQHQ 303 8888888888888888888888888888888888888888888888888888888888888888888865544444444444555444..66666444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-29 | 112 | 275 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.26 | 113 | 167 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MRLVPGSGRR INAKTYGWMD VDINWGAVEL GGHVPSCSLH TPEHRLRGFC LSVNHFRCLR 60 SALPFWIAFW SLTRVGMLTS NSDGSNGGAG PVLPTTSAAA VTSTVQKVKK LSAKDRNNKV 120 DGRGRRVRMP IVCAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIATTGT GTTPASFSNV 180 SSSGTRSSSP SISVSLDHKP ISHSLLTPSP APFILGKRIR PHDAGIHHRE RGFEESASTT 240 AATNSAVATG GFWALPARPD FGQVWSFTPH PEILVAASRN SPSSHHHQQQ THSSSLRFSQ 300 QHQHLSEASA ARVGNYLPIP QVNGHHLDLL ASLSGIPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678345248 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022868503.1 | 2e-94 | transcription factor TCP7-like | ||||
Refseq | XP_022868504.1 | 2e-94 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-66 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A4D8ZI28 | 1e-92 | A0A4D8ZI28_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION) | ||||
STRING | XP_010249637.1 | 5e-75 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-46 | TCP family protein |